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Force field parameters from Lipidbook
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Parameter files in this zip file were downloaded from lipidbook.bioch.ox.ac.uk.
Linked parameters need to be manually downloaded via the links in links.txt.

Always cite the primary reference(s) for the parameters, which can be
found at the end of this file.

Please cite Lipidbook in your published work with the reference

J. Domanski, P. Stansfeld, M.S.P. Sansom, and O. Beckstein. 
Lipidbook: A Public Repository for Force Field Parameters Used in Membrane 
Simulations. J. Membrane Biol. 236 (2010), 255--258. doi:10.1007/s00232-010-9296-8. 
URL:http://lipidbook.bioch.ox.ac.uk

 

License: Fair Use (http://www.copyrightservice.co.uk/copyright/p09_fair_use) 
 NOTE: The licence REQUIRES that you cite the primary reference when
       you use and/or modify these files.  See the link under Licence for
       details.
 

Overview
========
Lipid:         1-palmitoyl,2-oleoyl-sn-glycero-3-phosphocholine (POPC)
Forcefield:    GROMOS43A1-S3
Code:          Gromacs
Version:       1 (created: 01-06-2012, last update: 01-06-2012)
Curator:       Oliver Beckstein
Lipidbook URL: http://lipidbook.bioch.ox.ac.uk/version/show/id/93.html
 
File manifest
=============
Downloaded files are listed with SHA1 checksums. You can compute the
checksums of the downloaded files (e.g. with the 'openssl sha1' or
the 'sha1sum' commands) and compare them to the listed ones. If they
agree you have verified the files; it also allows a simple check of
which files changed between versions.
 
ffG43A1-S3.02.itp         : e9dce266afc5dd7713aeaa44c4c77a4e7311405d
links.txt                 : 1d4cf47a2e4c79d0af985b5cea5d21887f4f34a3
popc.gro                  : 41b49cb6a363b0c4f1a8028a10918087fdbf6b9e
popc.itp                  : 3003c14876bf3fe729c85c172d3c9ccd0f279d46
popc.pdb                  : d124d4b0e421712811aa74bc3cfa94179735f00d
popc_structure.gro        : 9783e843f63ae52833dfd27e2c24aeee7bc57cff
popc_structure.pdb        : d3f92f139f14414b2572452587f30c6b9eb36375
SHA1 of all files         : 847da2e544d363aef7bf7c43395ff30d3ac8181d

Primary reference(s)
===================
Please always credit the original authors of the parameters by citing 
these papers:
 

Title:     An improved united atom force field for simulation of mixed lipid bilayers.
Authors:   Chiu SW, Pandit SA, Scott HL, Jakobsson E
Journal:   J Phys Chem B  
Year:      2009 Mar 5
Volume:    113
Page:      2748-63
pubmed id: 19708111
doi:       10.1021/jp807056c

Additional notes:  
           -

Title:     Cholesterol surrogates: a comparison of cholesterol and 16:0 ceramide in POPC bilayers.
Authors:   Pandit SA, Chiu SW, Jakobsson E, Grama A, Scott HL
Journal:   Biophys J  
Year:      2007 Feb 1
Volume:    92
Page:      920-7
pubmed id: 17071659
doi:       10.1529/biophysj.106.095034

Additional notes:  
           -